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271件ヒットしました ( 1 - 20 )
検索条件   管理番号(10000291)
No.著(作)者. タイトル. 誌名・発行者. 年月. RecID
1
Tatsuki Negami, Kentaro Shimizu, Tohru Terada. Coarse-grained molecular dynamics simulation of protein conformational change coupled to ligand binding. Chemical Physics Letters. 2020/03. 論文031187
2
Takatoshi Arakawa, Yuta Sato, Masayuki Yamada, Jumpei Takabe, Yoshitaka Moriwaki, Noriya Masamura, Masahiro Kato, Morihiro Aoyagi, Takahiro Kamoi, Tohru Terada, Kentaro Shimizu, Nobuaki Tsuge, Shinsuke Imai, Shinya Fushinobu. Dissecting the Stereocontrolled Conversion of Short-Lived Sulfenic Acid by Lachrymatory Factor Synthase. ACS Catalysis. 2020/01. 論文031186
3
Peng Lu, Yoshitaka Moriwaki, Mimin Zhang, Yukie Katayama, Yi Lu, Ken Okamoto, Tohru Terada, Kentaro Shimizu, Mengyao Wang, Takehiro Kamiya, Toru Fujiwara, Tomiko Asakura, Michio Suzuki, Etsuro Yoshimura and Koji Nagata. Functional characterisation of two ferric-ion coordination modes of TtFbpA, the periplasmic subunit of an ABC-type iron transporter from Thermus thermophilus HB8. Metallomics. 2019/12. 論文031184
4
Yoshitaka Moriwaki, Mirai Yato, Tohru Terada, Seiji Saito, Noriyuki Nukui, Takumi Iwasaki, Tatsunari Nishi, Yuko Kawaguchi, Ken Okamoto, Takatoshi Arakawa, Chihaya Yamada, Shinya Fushinobu, Kentaro Shimizu. Understanding the Molecular Mechanism Underlying the High Catalytic Activity of p-Hydroxybenzoate Hydroxylase Mutants for Producing Gallic Acid. Biochemistry. 2019/10. 論文031185
5
Zihan Tian, Cao Wei, Yoshitaka Moriwaki, Tohru Terada, Shugo Nakamura, Kazuya Sumikoshi, Fang Chun, and Kentaro Shimizu.  Prediction of protein–metal ion-binding sites using sequence homology and machine-learning methods. Advanced Bioinformatics and Chemistry. 2019/09. 論文030987
6
Takayuki Osabe, Kentaro Shimizu, Koji Kadota. Accurate classification of differential expression patterns in a Bayesian framework with robust normalization for multi-group RNA-seq count data. Bioinformatics and Biology Insights. 2019/08. 論文030985
7
Chun Fang,Yoshitaka Moriwaki, Daming Zhu, and K. Shimizu. Identifying MoRFs in Disordered Proteins Using Enlarged Conserved Features. 2018 6th International Conference on Bioinformatics and Computational Biology. 2018. 論文029135
8
Xi Fu, Jianqiang Sun, Engkong Tan, Kentaro Shimizu, Md Shaheed Reza, Shugo Watabe, and Shuichi Asakawa. High-throughput sequencing of the expressed torafugu (Takifugu rubripes) antibody sequences distinguishes IgM and IgT repertoires and reveals evidence of convergent evolution. Frontiers in Immunology. 2018. 論文029136
9
Shitao Zhao, Jianqiang Sun, Kentaro Shimizu, and Koji Kadota. Silhouette scores for arbitrary defined groups in gene expression data and insights into differential expression results. Biological Procedures Online. 2018. 論文029137
10
Chun Fang, Yoshitaka Moriwaki, Aikui Tian, Caihong Li, and Kentaro Shimizu. Identifying short disorder-to-order binding regions in disordered proteins with a deep convolutional neural network method. Journal of Bioinformatics and Computational Biology. 2018. 論文029138
11
Kentaro Shimizu, Wei Cao, Gull Saad, Michiru Shoji, and Tohru Terada. Comparative analysis of membrane protein structure databases. BBA - Biomembranes. 2018. 論文029141
12
Yifan Tang, Cao Wei, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Koji Kadota, and Kentaro Shimizu. Predicting protein-protein interactions using sequence homology and machine-learning methods. Research Journal of Life Sciences, Bioinformatics, Pharmaceutical, and Chemical Sciences. 2017/09. 論文026218
13
谷澤靖洋, 真島 淳, 藤澤貴智, 李 慶範, 中村保一, 清水謙多郎, 門田幸二. 次世代シーケンサーデータの解析手法:第9回ゲノムアノテーションとその可視化、DDBJへの登録. Japanese Journal of Lactic Acid Bacteria. 2017. 総説005795
14
谷澤靖洋, 藤澤貴智, 真島 淳, 李 慶範, 遠野雅徳, 坂本光央, 大熊盛也, 中村保一, 清水謙多郎, 門田幸二. 次世代シーケンサーデータの解析手法:第10回DDBJへの塩基配列の登録(実践編). Japanese Journal of Lactic Acid Bacteria. 2017. 総説005796
15
Masaki Banno, Yusuke Komiyama, Wei Cao, Yuya Oku, Kokoro Ueki, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, Kentaro Shimizu. Development of a sugar-binding residue prediction system from protein sequences using support vector machine. Journal of Computational Biology and Chemistry. 2016/11. 論文026217
16
Marie Kubota, Kaoru Takeuchi, Shumpei Watanabe, Shinji Ohno, Rei Matsuoka, Daisuke Kohda, Shin-ichi Nakakita, Hiroaki Hiramatsu, Yasuo Suzuki, Tetsuo Nakayama, Tohru Terada, Kentaro Shimizu, Nobutaka Shimizu, Mitsunori Shiroishi, Yusuke Yanagi, and Takao Hashiguchi. Trisaccharide containing α2,3-linked sialic acid acid is a receptor for mumps virus. Proceedings of the National Academy of Sciences. 2016/10. 論文026216
17
Shunsuke Shigemitsu, Cao Wei, Tohru Terada, and Kentaro Shimizu. Development of a prediction system for tail-anchored proteins. BMC Bioinformatics. 2016/09. 論文026214
18
Wayne Dawson, Ryota Jono, Tohru Terada, and Kentaro Shimizu. Electron transport in a dioxygenase-ferredoxin complex: long range charge coupling between the Rieske and non-heme iron center. PLoS ONE. 2016/09. 論文026215
19
Hiroto Tsujikawa, Kenta Sato, Cao Wei, Gul Saad, Kazuya Sumikoshi, Shugo Nakamura, Tohru Terada, and Kentaro Shimizu. Development of a protein–ligand-binding site prediction method based on interaction energy and sequence conservation. Journal of Structural and Functional Genomics. 2016/07. 論文026213
20
谷澤靖洋, 神沼英里, 中村保一, 清水謙多郎, 門田幸二. 次世代シーケンサーデータの解析手法:第6回ゲノムアセンブリ. Japanese Journal of Lactic Acid Bacteria. 2016. 総説005792